Pathway Tools Intro Tutorial
February 12-14, 2019
Early Registration Open
Pathway Tools Intro Tutorial
February 12-14, 2019
Early Registration Open
Pathway Tools Intro Tutorial
February 12-14, 2019
Early Registration Open
Pathway Tools Intro Tutorial
February 12-14, 2019
Early Registration Open
Pathway Tools Intro Tutorial
February 12-14, 2019
Early Registration Open

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Introduction to BioCyc
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BioCyc Webinars

Webinars on Demand: Download Webinar Videos

The BioCyc on Demand Webinar series introduces basic and advanced features of the BioCyc website and the Pathway Tools software system via a combination of narration and practical demonstration. Webinar videos can be downloaded directly from the links on this site.

Webinar #1: Introduction to BioCyc

Make the most of BioCyc! The "Introduction to BioCyc" webinar introduces you to the BioCyc.org site and to the BioCyc collection of thousands of Pathway/Genome Databases.

"Introduction to BioCyc" is presented here in six sequential segments, giving you a guided tour of the BioCyc collection in concise bites. To download or view, just click on one of the links following each segment's name.

Webinar #2: Introduction to SmartTables

The following webinar will guide you through SmartTables, which enable you to create, upload, share, and analyze sets of genes, metabolites, pathways, and sequence sites. The webinar is broken up into parts, ranging from basic operations to more advanced uses such as gene expression analysis and metabolomics. To download or view, click one of the links below.

Webinar #3: Omics Data Analysis, Comparative Tools, Zoomable Metabolic Map

This webinar introduces users to many of the advanced tools available on the BioCyc.org website for navigating cellular networks, analyzing large-scale datasets, and comparing organisms.

Available segments:

Webinar #4: Omics Dashboard

This webinar will show you how to use the Omics Dashboard, a new tool for visualizing omics data, such as transcriptomics and metabolomics data.

Webinar #5: Pathway Collages

Pathway collages are multi-pathway diagrams that you can customize in various respects, such as overlaying omics data, altering the relative positions of pathways, and modifying connections among pathways. This webinar will show you how to generate, customize and export high-quality pathway-collage diagrams showing collections of user-specified pathways.

Webinar #6: Creating a Pathway/Genome Database

This webinar walks you through the process of building a BioCyc-like Pathway/Genome Database (PGDB) for an organism with a sequenced and annotated genome. Learn how to predict metabolic pathways and operons, how to revise gene and protein annotations, build metabolic pathways, make protein complexes, add metabolic reactions and compounds, and assign Gene Ontology (GO) terms to genes. Build a PGDB for your own lab or for the whole scientific community. Segments:

Webinar #7: Using the Structured Advanced Query Page

The "Using the Structured Advanced Query Page" webinar introduces users to the Structured Advanced Query Page, which allows complex queries and queries across one or more databases in the BioCyc collection. In this webinar, you'll learn about:

  • The basic steps of setting up an advanced query
  • Four examples of increasingly complex queries, including how to query across multiple databases
  • Where to learn more about the structure of BioCyc databases

To download or view, click one of the links below.