Public SmartTables Directory

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A SmartTable is a collection of BioCyc objects, such as genes or metabolites, together with associated data, that can be created, edited, manipulated, and shared on the web.

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	SmartTable	Description	Organism	Type	Size	Owner	Update Time
1	Gold_standard_TF_binding_sites		Escherichia coli K-12 substr. MG1655	dna-binding-sites	57	Scott Saunders	Today 11:47 am
2	Gold_Standard_Transcription_units_public		Escherichia coli K-12 substr. MG1655	transcription-units	15	Scott Saunders	Today 11:46 am
3	New SmartTable with trpA		Bacillus subtilis subtilis 168, [Propionibacterium] humerusii P08, Mageeibacillus indolicus UPII9...	all-genes	4	Anamika Kothari	Wed Nov 11 2020 09:39 am
4	All compounds of MetaCyc		MetaCyc	compounds	16179	Joanna Wolthuis	Wed Oct 28 2020 01:50 pm
5	Cornerstone Cheeses		MetaCyc	reactions	5869	Ben Robinson	Sun Oct 25 2020 03:32 pm
6	Essential genes in Clostridioides difficile R20291	SmartTable created from essential genes reported in Dembek et al., MBio 6(2):e02383 (2015).	Clostridioides difficile R20291	all-genes	377	Ingrid Keseler	Wed Sep 30 2020 09:23 am
7	Growth-Status of all genes (E. coli K-12 substr. MG1655)		Escherichia coli K-12 substr. MG1655	all-genes	4708	Tatsuya Sakaguchi	Thu Sep 24 2020 04:02 pm
8	Copy number and essentiality of all genes (E. coli K-12 substr. MG1655)		Escherichia coli K-12 substr. MG1655	all-genes	4703	Tatsuya Sakaguchi	Tue Sep 15 2020 08:41 am
9	front-door regulatory motifs	Matches all regulatory motifs of the form Cause -> Mediator -> Effect and Cause <- Regulator -> ...	Escherichia coli K-12 substr. MG1655	all-genes	151	Jeremy Zucker	Tue Sep 01 2020 12:00 am
10	New SmartTable - 2020-08-20T04:13:12-07:00		MetaCyc	pathways	387	Paschalis Natsidis	Thu Aug 20 2020 05:00 am
11	COG-annotations-and-functional-groups	COG annotations and functional classes Based on: Galperin MY, Makarova KS, Wolf YI, Koonin EV. Exp...	Escherichia coli K-12 substr. MG1655	all-genes	2834	H Deter	Tue Jul 21 2020 08:11 am
12	Cellular state biomarkers		Bacillus subtilis subtilis 168	all-genes	11	YIMING HUANG	Sat Jul 04 2020 11:48 am
13	All compounds of S. cerevisiae S288c		Saccharomyces cerevisiae S288c	proteins, compounds	1569	John W. K. Oliver	Tue Jun 16 2020 10:35 pm
14	GeneGO_Desulfovibriovulgaris		Desulfovibrio vulgaris Miyazaki F	all-genes	3226	Bryant Chambers	Wed May 13 2020 11:38 am
15	RNA-seq data for RpoD_WT at 37C		Escherichia coli K-12 substr. MG1655	all-genes	4418	Bokyung Son	Wed May 06 2020 07:45 am
16	All CG data E. coi vs Tellurite	All Chemical Genomics data from E. coli vs tellurite	Escherichia coli K-12 substr. MG1655	string, all-genes	3521	Roberto Luraschi	Tue May 05 2020 09:27 am
17	E. coli binding-sites	To generate this ST, I started with the special ST for all transcription factors. I then added the t...	Escherichia coli K-12 substr. MG1655	dna-binding-sites	3153	Suzanne Paley	Mon Apr 27 2020 12:47 am
18	DESeq ZC vs YC			string, all-genes	243	Matthew Hinderhofer	Thu Apr 16 2020 10:07 am
19	DESeq YC vs YMC			all-genes	43	Matthew Hinderhofer	Thu Apr 16 2020 10:05 am
20	DESeq ZC vs ZB			string, all-genes	548	Matthew Hinderhofer	Thu Apr 16 2020 10:04 am

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