Summary This Pan-Genome Pathway/Genome Database (PGDB) was generated by Pathway Tools software version 23.5 and MetaCyc version 23.5 on 07-Dec-2019 15:08:54. The Pan-Genome was built from the 75 organisms listed in the table below. Listeria monocytogenes 10403S was the lead organism. For more information on how Pan-Genomes are built, please see the PGDB Concepts Guide. The Total Gene Count column is the number of genes that a particular organism contained, whereas the Unique ORFs is the count of the genes for which no orthologs were found in other organisms in the Pan-Genome.
Genome
RepliconTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
Chromosome2,9782,82815002,903,106
Artificial Replicon2,0612,061001,162,470
Total:5,0394,88915004,065,576
Ortholog data available?No
Constituent Organisms

OrganismNCBI TaxonTotal Gene CountUnique ORFsUnique Reactions
Listeria monocytogenes HPB913NCBI-Taxonomy:1639309010
Listeria monocytogenes serotype 1/2a 10-0933NCBI-Taxonomy:1196169291610
Listeria monocytogenes serotype 1/2c 10-5026NCBI-Taxonomy:1196194303810
Listeria monocytogenes FSL N1-017NCBI-Taxonomy:3931233267640
Listeria monocytogenes L99NCBI-Taxonomy:563174308220
Listeria monocytogenes CFSAN029793NCBI-Taxonomy:1639309990
Listeria monocytogenes 08-6569NCBI-Taxonomy:1196183312210
Listeria monocytogenes M7NCBI-Taxonomy:1030009308120
Listeria monocytogenes 81-0861NCBI-Taxonomy:1196161302510
Listeria monocytogenes serotype 1/2a 95-0093NCBI-Taxonomy:1196177308330
Listeria monocytogenes J1816NCBI-Taxonomy:9307813001200
Listeria monocytogenes serotype 1/2a 10-4758NCBI-Taxonomy:1196168297310
Listeria monocytogenes FSL J1-194NCBI-Taxonomy:393117305840
Listeria monocytogenes FSL R2-561NCBI-Taxonomy:393126304460
Listeria monocytogenes 08-6997NCBI-Taxonomy:1196184312310
Listeria monocytogenes N53-1NCBI-Taxonomy:12341423189610
Listeria monocytogenesNCBI-Taxonomy:1639321654954
Listeria monocytogenes SLCC7179NCBI-Taxonomy:879090294750
Listeria monocytogenes serotype 1/2a 10-1321NCBI-Taxonomy:1196191308010
Listeria monocytogenes 07PF0776NCBI-Taxonomy:1126011288030
Listeria monocytogenes serotype 4b 02-1792NCBI-Taxonomy:1196173303310
Listeria monocytogenes serotype 1/2a 10-0934NCBI-Taxonomy:1196170291610
Listeria monocytogenes SLCC2479NCBI-Taxonomy:882020304810
Listeria monocytogenes Clip80459NCBI-Taxonomy:568819293510
Listeria monocytogenes serotype 4b 02-6680NCBI-Taxonomy:1196175293310
Listeria monocytogenes serotype 1/2a 10-5024NCBI-Taxonomy:1196192308010
Listeria monocytogenes serotype 4b 02-1103NCBI-Taxonomy:1196171303310
Listeria monocytogenes EGD-e (LMON169963)NCBI-Taxonomy:169963305591
Listeria monocytogenes serotype 4b 10-0809NCBI-Taxonomy:1196162302510
Listeria monocytogenes 10403SNCBI-Taxonomy:3931332979100
Listeria monocytogenes serotype 4b 81-0558NCBI-Taxonomy:1196159301910
Listeria monocytogenes serotype 4b 02-1289NCBI-Taxonomy:1196172303310
Listeria monocytogenes serotype 1/2a 10-4754NCBI-Taxonomy:1196167297310
Listeria monocytogenes serotype 4b 02-6679NCBI-Taxonomy:1196174293310
Listeria monocytogenes J1-220NCBI-Taxonomy:930782310620
Listeria monocytogenes SLCC2378NCBI-Taxonomy:879088297810
Listeria monocytogenes EGDNCBI-Taxonomy:1334565296810
Listeria monocytogenes HCC23NCBI-Taxonomy:552536308050
Listeria monocytogenes 10-1047NCBI-Taxonomy:1196190307510
Listeria monocytogenes SLCC2540NCBI-Taxonomy:8790893004261
Listeria monocytogenes FSL N3-165NCBI-Taxonomy:3931242919120
Listeria monocytogenes J0161NCBI-Taxonomy:3931303077150
Listeria monocytogenes serotype 1/2a 08-7669NCBI-Taxonomy:1196186301910
Listeria monocytogenes serotype 1/2a 10-0813NCBI-Taxonomy:1196166301410
Listeria monocytogenes SLCC2376NCBI-Taxonomy:8820972864200
Listeria monocytogenes serotype 1/2a 08-7374NCBI-Taxonomy:1196185308010
Listeria monocytogenes serotype 1/2a 08-6056NCBI-Taxonomy:1196182312510
Listeria monocytogenes serotype 1/2a 10-1046NCBI-Taxonomy:1196189307710
Listeria monocytogenes serotype 1/2a 98-2035NCBI-Taxonomy:1196178312710
Listeria monocytogenes serotype 4b 81-0592NCBI-Taxonomy:1196160302510
Listeria monocytogenes serotype 1/2a 10-0814NCBI-Taxonomy:1196187308010
Listeria monocytogenes Finland 1988NCBI-Taxonomy:393127290580
Listeria monocytogenes HPB2262NCBI-Taxonomy:401650307970
Listeria monocytogenes FSL J1-175NCBI-Taxonomy:393118323160
Listeria monocytogenes serotype 1/2a 99-6370NCBI-Taxonomy:1196179312710
Listeria monocytogenes ATCC 19117NCBI-Taxonomy:882095297610
Listeria monocytogenes 10-0815NCBI-Taxonomy:1196188312310
Listeria monocytogenes serotype 1/2a 04-5457NCBI-Taxonomy:1196181308110
Listeria monocytogenes 88-0478NCBI-Taxonomy:1196176307410
Listeria monocytogenes serotype 1/2c 10-5025NCBI-Taxonomy:1196193303810
Listeria monocytogenes serotype 3c 10-5027NCBI-Taxonomy:1196195304120
Listeria monocytogenes LL195NCBI-Taxonomy:1230340294310
Listeria monocytogenes 4b F2365NCBI-Taxonomy:265669294310
Listeria monocytogenes serotype 1/2a 10-0812NCBI-Taxonomy:1196165301410
Listeria monocytogenes 10-0811NCBI-Taxonomy:1196164307510
Listeria monocytogenes SLCC2482NCBI-Taxonomy:863767302130
Listeria monocytogenes SLCC2755NCBI-Taxonomy:932919304520
Listeria monocytogenes serotype 1/2a 02-5993NCBI-Taxonomy:1196180308110
Listeria monocytogenes L312NCBI-Taxonomy:882094293510
Listeria monocytogenes 08-5923NCBI-Taxonomy:637381307610
Listeria monocytogenes serotype 1/2b 10-0810NCBI-Taxonomy:1196163307510
Listeria monocytogenes SLCC2372NCBI-Taxonomy:932920310710
Listeria monocytogenes 08-5578NCBI-Taxonomy:6539383203140
Listeria monocytogenes SLCC5850NCBI-Taxonomy:882096296910

Database Contents
Genes5,039
Pathways345
Enzymatic Reactions1,389
Transport Reactions150
Polypeptides4,889
Protein Complexes28
Enzymes1,056
Transporters570
Compounds943
tRNAs85
Database Version29.0
Synonyms Bacterium monocytogenes
Bacterium monocytogenes hominis
Corynebacterium infantisepticum
Corynebacterium parvulum
Erysipelothrix monocytogenes
Listerella hepatolytica
Listeria sp. FDA00013359
Listeria sp. FDA00013360
Listeria sp. FDA00013361
Listeria sp. FDA00013362
Listeria sp. FDA00013363
Listeria sp. FDA00013364
Listeria sp. FDA00013365
Listeria sp. FDA00013366
Listeria sp. FDA00013367
Listeria sp. FDA00013503
Listeria sp. FDA00013504
Listeria sp. FDA00013505
Listeria sp. FDA00013506
Listeria sp. FDA00013507
Listeria sp. FDA00013508
Listeria sp. FDA00013509
Listeria sp. FDA00013510
Listeria sp. FDA00013511
Listeria sp. FDA00013512
Listeria sp. FDA00013536
Listeria sp. FDA00013537
Listeria sp. FDA00013538
Listeria sp. FDA00013539
Listeria sp. FDA00013540
Listeria sp. FDA00013541
Listeria sp. FDA00013542
Listeria sp. FDA00013543
Listeria sp. FDA00013544
Listeria sp. FDA00013545
Listeria sp. FDA00013546
Listeria sp. FDA00013547
Listeria sp. FDA00013548
Listeria sp. FDA00013549
Listeria sp. FDA00013550
Listeria sp. FDA00013551
Listeria sp. FDA00013552
Listeria sp. FDA00013553
Listeria sp. FDA00013554
Listeria sp. FDA00013555
Listeria sp. FDA00013556
Listeria sp. FDA00013557
Listeria sp. FDA00013558
Listeria sp. FDA00013559
Listeria sp. FDA00013560
Listeria sp. FDA00013561
Listeria sp. FDA00013562
Listeria sp. FDA00013563
Listeria sp. FDA00013564
Listeria sp. FDA00013565
Listeria sp. FDA00013566
Listeria sp. FDA00013567
Listeria sp. FDA00013568
Listeria sp. FDA00013570
Listeria sp. FDA00013571
Listeria sp. FDA00013572
Listeria sp. FDA00013573
Listeria sp. FDA00013574
Listeria sp. FDA00013575
Listeria sp. FDA00013576
Listeria sp. FDA00013577
Listeria sp. FDA00013578
Listeria sp. FDA00013579
Listeria sp. FDA00013607
Genetic Code Number 11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
L. monocytogenes 10403S10403S_RAST
NCBI-Taxonomy1639

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