Summary of Helicobacter pylori Pan-Genome, version 29.6

Tier 3 Uncurated Organism Database

Summary

This Pan-Genome Pathway/Genome Database (PGDB) was generated by Pathway Tools software version 23.5 and MetaCyc version 23.5 on 13-Dec-2019 15:14:41. The Pan-Genome was built from the 195 organisms listed in the table below. Helicobacter pylori 26695 was the lead organism. For more information on how Pan-Genomes are built, please see the PGDB Concepts Guide. The Total Gene Count column is the number of genes that a particular organism contained, whereas the Unique ORFs is the count of the genes for which no orthologs were found in other organisms in the Pan-Genome.

Genome

Replicon	Total Genes	Protein Genes	RNA Genes	Pseudogenes	Size (bp)
26695 Chromosome	1,610	1,567	43	0	1,667,867
Artificial Replicon	2,103	2,103	0	0	743,466

Total:	3,713	3,670	43	0	2,411,333

Ortholog data available?	No

Constituent Organisms

Organism	NCBI Taxon	Total Gene Count	Unique ORFs	Unique Reactions

Helicobacter pylori GAM252Bi	NCBI-Taxonomy:1159041	1568	2	0
Helicobacter pylori Hp P-30	NCBI-Taxonomy:992087	1625	7	0
Helicobacter pylori Hp M2	NCBI-Taxonomy:992118	1638	3	0
Helicobacter pylori CCUG 17874	NCBI-Taxonomy:102618	1686	3	0
Helicobacter pylori Cuz20	NCBI-Taxonomy:765964	1616	2	0
Helicobacter pylori N6	NCBI-Taxonomy:102616	1673	5	0
Helicobacter pylori Hp H-18	NCBI-Taxonomy:992065	1750	6	0
Helicobacter pylori GAM260BSi	NCBI-Taxonomy:1159046	1565	2	0
Helicobacter pylori HP250BFiV	NCBI-Taxonomy:1159074	1579	2	0
Helicobacter pylori GAM120Ai	NCBI-Taxonomy:1159029	1679	3	0
Helicobacter pylori HP260AFi	NCBI-Taxonomy:1159076	1620	2	0
Helicobacter pylori v225d	NCBI-Taxonomy:637913	1574	7	0
Helicobacter pylori HP250BFii	NCBI-Taxonomy:1159072	1576	2	0
Helicobacter pylori GAMchJs114i	NCBI-Taxonomy:1159060	1600	2	0
Helicobacter pylori MALT	NCBI-Taxonomy:1200324	1546	5	0
Helicobacter pylori Hp A-8	NCBI-Taxonomy:992053	1615	4	0
Helicobacter pylori F32	NCBI-Taxonomy:102608	1538	3	0
Helicobacter pylori NQ4191	NCBI-Taxonomy:981221	1626	3	0
Helicobacter pylori Aklavik117	NCBI-Taxonomy:1055531	1590	4	0
Helicobacter pylori Hp H-5b	NCBI-Taxonomy:992092	1663	3	0
Helicobacter pylori Hp H-4	NCBI-Taxonomy:992060	1633	4	0
Helicobacter pylori Hp M9	NCBI-Taxonomy:992125	1644	2	0
Helicobacter pylori GAM245Ai	NCBI-Taxonomy:1159036	1621	1	0
Helicobacter pylori GAM263BFi	NCBI-Taxonomy:1159047	1628	3	0
Helicobacter pylori GAM244Ai	NCBI-Taxonomy:1159035	1604	4	0
Helicobacter pylori HP250ASi	NCBI-Taxonomy:1159069	1572	2	0
Helicobacter pylori Hp P-26	NCBI-Taxonomy:992085	1660	7	0
Helicobacter pylori OK113	NCBI-Taxonomy:1248725	1598	5	0
Helicobacter pylori F57	NCBI-Taxonomy:866346	1560	1	0
Helicobacter pylori GAM254Ai	NCBI-Taxonomy:1159043	1617	4	0
Helicobacter pylori HP260ASii	NCBI-Taxonomy:1159078	1620	2	0
Helicobacter pylori Hp P-25c	NCBI-Taxonomy:992111	1654	7	0
Helicobacter pylori R030b	NCBI-Taxonomy:1145111	1581	5	0
Helicobacter pylori Hp P-15b	NCBI-Taxonomy:992108	1635	3	0
Helicobacter pylori Hp P-3	NCBI-Taxonomy:992074	1619	7	0
Helicobacter pylori NAD1	NCBI-Taxonomy:1156915	1612	5	0
Helicobacter pylori Hp A-20	NCBI-Taxonomy:992037	1657	3	0
Helicobacter pylori Hp P-25d	NCBI-Taxonomy:992112	1642	5	0
Helicobacter pylori NQ4044	NCBI-Taxonomy:992028	1714	9	0
Helicobacter pylori GAM83Bi	NCBI-Taxonomy:1159055	1601	3	0
Helicobacter pylori Hp P-16	NCBI-Taxonomy:992081	1534	3	0
Helicobacter pylori HP116Bi	NCBI-Taxonomy:1159065	1639	2	0
Helicobacter pylori 908	NCBI-Taxonomy:869727	1548	3	0
Helicobacter pylori GAM250T	NCBI-Taxonomy:1159040	1575	2	0
Helicobacter pylori GAM80Ai	NCBI-Taxonomy:1159054	1614	2	0
Helicobacter pylori 51	NCBI-Taxonomy:290847	1575	3	0
Helicobacter pylori Shi112	NCBI-Taxonomy:1163740	1607	5	0
Helicobacter pylori GAM210Bi	NCBI-Taxonomy:1159032	1601	2	0
Helicobacter pylori Shi169	NCBI-Taxonomy:1163741	1559	3	0
Helicobacter pylori GAM117Ai	NCBI-Taxonomy:1159026	1646	2	0
Helicobacter pylori NQ352	NCBI-Taxonomy:981214	1623	3	0
Helicobacter pylori UM066	NCBI-Taxonomy:1321940	1614	3	0
Helicobacter pylori Hp P-23	NCBI-Taxonomy:992083	1647	12	1
Helicobacter pylori Hp P-8	NCBI-Taxonomy:992077	1593	3	0
Helicobacter pylori NQ4053	NCBI-Taxonomy:992027	1638	11	0
Helicobacter pylori GAM250AFi	NCBI-Taxonomy:1159039	1569	2	0
Helicobacter pylori 52	NCBI-Taxonomy:684950	1549	3	0
Helicobacter pylori GAM231Ai	NCBI-Taxonomy:1159033	1593	2	0
Helicobacter pylori Hp P-1b	NCBI-Taxonomy:992098	1624	3	0
Helicobacter pylori Hp P-4c	NCBI-Taxonomy:992102	1649	3	0
Helicobacter pylori FD423	NCBI-Taxonomy:1191279	1678	9	0
Helicobacter pylori Puno120	NCBI-Taxonomy:1055528	1585	7	0
Helicobacter pylori NQ4228	NCBI-Taxonomy:992025	1618	3	0
Helicobacter pylori Hp P-1	NCBI-Taxonomy:992072	1634	3	0
Helicobacter pylori Hp P-13b	NCBI-Taxonomy:992107	1680	2	0
Helicobacter pylori HP250AFii	NCBI-Taxonomy:1159066	1573	2	0
Helicobacter pylori Hp P-13	NCBI-Taxonomy:992079	1829	97	2
Helicobacter pylori Hp M4	NCBI-Taxonomy:992120	1643	2	0
Helicobacter pylori Hp H-9	NCBI-Taxonomy:992062	1607	2	0
Helicobacter pylori GAM239Bi	NCBI-Taxonomy:1159034	1630	2	0
Helicobacter pylori CPY1962	NCBI-Taxonomy:992016	1565	5	0
Helicobacter pylori Aklavik86	NCBI-Taxonomy:1055532	1472	17	0
Helicobacter pylori A45	NCBI-Taxonomy:1231719	1621	5	0
Helicobacter pylori UM032		1572	2	0
Helicobacter pylori ELS37	NCBI-Taxonomy:1055527	1597	6	0
Helicobacter pylori Hp H-16	NCBI-Taxonomy:992038	1666	5	1
Helicobacter pylori NQ1671	NCBI-Taxonomy:981220	1619	2	0
Helicobacter pylori HP250BFi	NCBI-Taxonomy:1159071	1606	2	0
Helicobacter pylori Hp M6	NCBI-Taxonomy:992122	1641	3	0
Helicobacter pylori Hp H-6	NCBI-Taxonomy:992061	1657	5	0
Helicobacter pylori SouthAfrica20	NCBI-Taxonomy:1352356	1579	13	0
Helicobacter pylori GAM119Bi	NCBI-Taxonomy:1159028	1649	4	0
Helicobacter pylori NQ1712	NCBI-Taxonomy:981213	1577	2	0
Helicobacter pylori GAM260ASi	NCBI-Taxonomy:1159044	1615	2	0
Helicobacter pylori R018c	NCBI-Taxonomy:1145110	1632	8	0
Helicobacter pylori Puno135	NCBI-Taxonomy:1055529	1606	3	0
Helicobacter pylori NQ4161	NCBI-Taxonomy:992030	1637	4	0
Helicobacter pylori HP250ASii	NCBI-Taxonomy:1159070	1572	2	0
Helicobacter pylori Hp P-8b	NCBI-Taxonomy:992105	1599	3	0
Helicobacter pylori NQ4110	NCBI-Taxonomy:992031	1577	6	1
Helicobacter pylori GAM101Biv	NCBI-Taxonomy:1159020	1608	3	0
Helicobacter pylori HP260AFii	NCBI-Taxonomy:1159077	1620	2	0
Helicobacter pylori HP250AFiii	NCBI-Taxonomy:1159067	1571	2	0
Helicobacter pylori Hp P-25	NCBI-Taxonomy:992084	1872	136	12
Helicobacter pylori 2018	NCBI-Taxonomy:985080	1557	3	0
Helicobacter pylori GAM96Ai	NCBI-Taxonomy:1159058	1650	26	0
Helicobacter pylori NQ4060	NCBI-Taxonomy:981218	1636	2	0
Helicobacter pylori NQ4099	NCBI-Taxonomy:992026	1609	4	0
Helicobacter pylori HP250BFiii	NCBI-Taxonomy:1159073	1576	2	0
Helicobacter pylori Hp H-41	NCBI-Taxonomy:992046	1637	3	0
Helicobacter pylori GAM112Ai	NCBI-Taxonomy:1159023	1611	3	0
Helicobacter pylori NQ367	NCBI-Taxonomy:981219	1590	3	0
Helicobacter pylori GAM118Bi	NCBI-Taxonomy:1159027	1654	2	0
Helicobacter pylori Hp M1	NCBI-Taxonomy:992117	1641	3	0
Helicobacter pylori NCTC 11637	NCBI-Taxonomy:102618	1679	6	0
Helicobacter pylori UM037	NCBI-Taxonomy:1321939	1675	6	0
Helicobacter pylori NQ4216	NCBI-Taxonomy:992023	1647	5	0
Helicobacter pylori BM012S	NCBI-Taxonomy:1407463	1662	3	0
Helicobacter pylori Hp A-16	NCBI-Taxonomy:992055	1615	5	0
Helicobacter pylori HUP-B14	NCBI-Taxonomy:1163743	1548	5	0
Helicobacter pylori Hp H-44	NCBI-Taxonomy:992049	1631	2	0
Helicobacter pylori GAMchJs136i	NCBI-Taxonomy:1159064	1652	3	0
Helicobacter pylori Hp M3	NCBI-Taxonomy:992119	1642	4	0
Helicobacter pylori B38	NCBI-Taxonomy:592205	1565	5	0
Helicobacter pylori GAM114Ai	NCBI-Taxonomy:1159024	1595	3	0
Helicobacter pylori GAM268Bii	NCBI-Taxonomy:1159050	1629	2	0
Helicobacter pylori 2017	NCBI-Taxonomy:985081	1548	3	0
Helicobacter pylori Hp P-3b	NCBI-Taxonomy:992100	1615	4	0
Helicobacter pylori GAM93Bi	NCBI-Taxonomy:1159057	1608	3	0
Helicobacter pylori Shi470	NCBI-Taxonomy:512562	1584	6	0
Helicobacter pylori HP250AFiV	NCBI-Taxonomy:1159068	1580	2	0
Helicobacter pylori GAMchJs117Ai	NCBI-Taxonomy:1159061	1592	2	0
Helicobacter pylori GAM42Ai	NCBI-Taxonomy:1159052	1605	2	0
Helicobacter pylori Hp A-26	NCBI-Taxonomy:992056	1606	4	0
Helicobacter pylori R055a	NCBI-Taxonomy:1145117	1622	6	0
Helicobacter pylori SJM180	NCBI-Taxonomy:765962	1617	2	0
Helicobacter pylori GAM246Ai	NCBI-Taxonomy:1159037	1650	4	0
Helicobacter pylori GAM265BSii	NCBI-Taxonomy:1159049	1646	3	0
Helicobacter pylori NQ392	NCBI-Taxonomy:981216	1651	2	0
Helicobacter pylori Gambia94/24	NCBI-Taxonomy:907240	1682	3	0
Helicobacter pylori F16	NCBI-Taxonomy:866344	1531	3	0
Helicobacter pylori NQ4200	NCBI-Taxonomy:992024	1601	4	0
Helicobacter pylori Hp H-45	NCBI-Taxonomy:992050	1639	5	0
Helicobacter pylori GAMchJs106B	NCBI-Taxonomy:1159059	1565	2	0
Helicobacter pylori GAM264Ai	NCBI-Taxonomy:1159048	1582	2	0
Helicobacter pylori SS1	NCBI-Taxonomy:102617	1585	2	0
Helicobacter pylori GAM249T	NCBI-Taxonomy:1159038	1592	4	0
Helicobacter pylori NQ1701	NCBI-Taxonomy:981215	1607	4	0
Helicobacter pylori PeCan18	NCBI-Taxonomy:1163742	1581	4	0
Helicobacter pylori R046Wa	NCBI-Taxonomy:1145116	1567	11	0
Helicobacter pylori GAM201Ai	NCBI-Taxonomy:1159031	1591	3	0
Helicobacter pylori Hp P-62	NCBI-Taxonomy:992089	1627	5	0
Helicobacter pylori GAM121Aii	NCBI-Taxonomy:1159030	1670	3	0
Helicobacter pylori NQ1707	NCBI-Taxonomy:981217	1660	2	0
Helicobacter pylori Hp P-11b	NCBI-Taxonomy:992106	1700	6	0
Helicobacter pylori GAM105Ai	NCBI-Taxonomy:1159022	1652	2	0
Helicobacter pylori 83	NCBI-Taxonomy:585538	1599	5	0
Helicobacter pylori NAB47	NCBI-Taxonomy:1156914	1605	5	0
Helicobacter pylori SouthAfrica7	NCBI-Taxonomy:907239	1619	9	0
Helicobacter pylori B8	NCBI-Taxonomy:693745	1637	5	0
Helicobacter pylori HP2RS	NCBI-Taxonomy:210	1748	5	0
Helicobacter pylori Hp P-74	NCBI-Taxonomy:992091	1600	3	0
Helicobacter pylori Hp P-28b	NCBI-Taxonomy:992114	1608	5	1
Helicobacter pylori XZ274	NCBI-Taxonomy:1127122	1611	8	0
Helicobacter pylori Rif1	NCBI-Taxonomy:1234365	1643	3	0
Helicobacter pylori GAM260Bi	NCBI-Taxonomy:1159045	1659	2	0
Helicobacter pylori PeCan4	NCBI-Taxonomy:765963	1611	9	0
Helicobacter pylori Hp P-4d	NCBI-Taxonomy:992103	1650	2	0
Helicobacter pylori Santal49	NCBI-Taxonomy:1055530	1579	8	0
Helicobacter pylori Shi417	NCBI-Taxonomy:1163739	1586	5	0
Helicobacter pylori UM298	NCBI-Taxonomy:1321941	1575	2	0
Helicobacter pylori OK310	NCBI-Taxonomy:1248726	1575	4	0
Helicobacter pylori GAM103Bi	NCBI-Taxonomy:1159021	1593	5	0
Helicobacter pylori GAM270ASi	NCBI-Taxonomy:1159051	1644	2	0
Helicobacter pylori GAM71Ai	NCBI-Taxonomy:1159053	1613	3	0
Helicobacter pylori HP260BFii	NCBI-Taxonomy:1159079	1565	2	0
Helicobacter pylori G27	NCBI-Taxonomy:563041	1619	4	0
Helicobacter pylori Hp P-4	NCBI-Taxonomy:992075	1649	4	0
Helicobacter pylori Hp A-27	NCBI-Taxonomy:992057	1625	4	0
Helicobacter pylori Hp P-11	NCBI-Taxonomy:992078	1696	6	0
Helicobacter pylori GAM100Ai	NCBI-Taxonomy:1159019	1615	4	0
Helicobacter pylori UM299	NCBI-Taxonomy:1321938	1573	2	0
Helicobacter pylori HP250BSi	NCBI-Taxonomy:1159075	1568	2	0
Helicobacter pylori Rif2	NCBI-Taxonomy:1234600	1644	4	0
Helicobacter pylori Hp M5	NCBI-Taxonomy:992121	1638	2	0
Helicobacter pylori HP260Bi	NCBI-Taxonomy:1159080	1660	2	0
Helicobacter pylori P12	NCBI-Taxonomy:570508	1664	3	0
Helicobacter pylori J99	NCBI-Taxonomy:85963	1607	3	0
Helicobacter pylori 26695	NCBI-Taxonomy:85962	1610	36	0
Helicobacter pylori Hp A-17	NCBI-Taxonomy:992036	1601	1	0
Helicobacter pylori HPAG1	NCBI-Taxonomy:357544	1588	6	0
Helicobacter pylori GAMchJs124i	NCBI-Taxonomy:1159062	1590	2	0
Helicobacter pylori Hp P-15	NCBI-Taxonomy:992080	1636	3	0
Helicobacter pylori NQ4076	NCBI-Taxonomy:992029	1590	4	0
Helicobacter pylori F30	NCBI-Taxonomy:866345	1538	4	0
Helicobacter pylori GAM115Ai	NCBI-Taxonomy:1159025	1684	3	0
Helicobacter pylori 35A	NCBI-Taxonomy:585535	1566	4	0
Helicobacter pylori India7	NCBI-Taxonomy:907238	1629	2	0
Helicobacter pylori BM012A	NCBI-Taxonomy:1407462	1663	3	0
Helicobacter pylori GAM83T	NCBI-Taxonomy:1159056	1601	2	0
Helicobacter pylori Sat464	NCBI-Taxonomy:794851	1553	5	0
Helicobacter pylori Lithuania75	NCBI-Taxonomy:907237	1619	5	0
Helicobacter pylori GAM252T	NCBI-Taxonomy:1159042	1574	2	0
Helicobacter pylori R036d	NCBI-Taxonomy:1145113	1623	7	0
Helicobacter pylori NQ315	NCBI-Taxonomy:981212	1602	3	0

Database Contents

Genes	3,713
Pathways	171
Enzymatic Reactions	892
Transport Reactions	51
Polypeptides	3,670
Protein Complexes	43
Enzymes	512
Transporters	188
Compounds	592
tRNAs	36

Database Version

29.6

Synonyms	Campylobacter pylori Campylobacter pylori subsp. pylori Campylobacter pyloridis Helicobacter nemestrinae
Genetic Code Number	11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
HpyCyc	HPY
NCBI-Taxonomy	210

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Page generated by Pathway Tools version 29.5 (software by SRI International) on Sat May 30, 2026, BIOCYC17B.

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