Summary This Pathway/Genome Database (PGDB) was generated by the PathoLogic [1, 2] component of Pathway Tools software version 25.0 and MetaCyc [3] version 25.0 on 01-Jul-2021 09:51:05.
Genome
ContigTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
NZ_BMYD010000011,4331,3923471,586,696NCBI Assembly:GCF_014652095.1
NZ_BMYD0100000248247921550,915NCBI Assembly:GCF_014652095.1
NZ_BMYD0100000337837422440,856NCBI Assembly:GCF_014652095.1
NZ_BMYD0100000428828233326,746NCBI Assembly:GCF_014652095.1
NZ_BMYD0100000524023811271,651NCBI Assembly:GCF_014652095.1
NZ_BMYD01000006969213115,906NCBI Assembly:GCF_014652095.1
NZ_BMYD0100000769644161,088NCBI Assembly:GCF_014652095.1
NZ_BMYD0100000843430045,581NCBI Assembly:GCF_014652095.1
NZ_BMYD0100000942410131,645NCBI Assembly:GCF_014652095.1
NZ_BMYD0100001014111216,417NCBI Assembly:GCF_014652095.1
6 Undisplayed Contigs/Replicons736112,482
Total:3,0953,01954223,459,983
Ortholog data available?No
Database Contents
Genes3,093
Pathways216
Enzymatic Reactions1,168
Transport Reactions41
Polypeptides3,029
Protein Complexes36
Enzymes695
Transporters186
Compounds868
Transcription Units2,121
tRNAs46
Protein Features4,069
Database Version29.0
Sequence SourceGCF_014652095.1
Synonyms Lysobacter sp. ZLD-29
Taxonomic Lineage cellular organisms
Bacteria <bacteria>
Pseudomonadota
Gammaproteobacteria
Lysobacterales
Lysobacteraceae
Lysobacter
Lysobacter bugurensis
Genetic Code Number 11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLESAMD00245600
NCBI BioProjectPRJNA224116
NCBI-Taxonomy543356
Annotation ProviderNCBI RefSeq
Annotation Date2020-11-23
Annotation PipelineNCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Pipeline Version4.13
Annotation CommentBest-placed reference protein set; GeneMarkS-2+
NCBI Genome Typerepresentative


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Page generated by Pathway Tools version 29.0 (software by SRI International) on Fri Jun 20, 2025, BIOCYC13.