Summary This Pathway/Genome Database (PGDB) was generated by the PathoLogic [1, 2] component of Pathway Tools software version 24.5 and MetaCyc [3] version 24.1 on 09-Jul-2020 18:44:35.
Genome
RepliconTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
NZ_AP0185582,1582,07162252,223,143RefSeq:NZ_AP018558
pTH178700865,637RefSeq:NZ_AP018559
Total:2,2362,14162332,288,780
Ortholog data available?Yes
Database Contents
Genes2,236
Pathways224
Enzymatic Reactions1,183
Transport Reactions42
Polypeptides2,143
Protein Complexes36
Enzymes627
Transporters174
Compounds885
Transcription Units955
tRNAs49
Protein Features3,029
Database Version29.0
Sequence SourceGCF_003574215.1
Synonyms Pseudomonas hydrogenothermophila
Taxonomic Lineage cellular organisms
Bacteria <bacteria>
Pseudomonadota
Hydrogenophilia
Hydrogenophilales
Hydrogenophilaceae
Hydrogenophilus
Hydrogenophilus thermoluteolus
Genetic Code Number 11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLESAMD00115820
NCBI BioProjectPRJNA224116
NCBI-Taxonomy297
Environmenthot spring
Geographic LocationJapan
Annotation ProviderNCBI RefSeq
Annotation Date2020-05-10
Annotation PipelineNCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Pipeline Version4.11
Annotation CommentBest-placed reference protein set; GeneMarkS-2+
NCBI Genome Typerepresentative


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Page generated by Pathway Tools version 29.0 (software by SRI International) on Sun Jul 6, 2025, BIOCYC15.