Summary of Streptomyces albulus CCRC 11814, version 29.6

Tier 3 Uncurated Organism Database

Database Authors

Pallavi Subhraveti¹, Peter Midford¹, Ingrid Keseler¹, Anamika Kothari¹, Ron Caspi¹, Peter D Karp¹

Summary

This Pathway/Genome Database (PGDB) was generated on 18-Nov-2021 from the annotated genome of Streptomyces albulus CCRC 11814, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 25.5) [Karp16, Karp11] using MetaCyc version 25.5 [Caspi20]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutes of Health.

Genome

Contig	Total Genes	Protein Genes	RNA Genes	Pseudogenes	Size (bp)	NCBI Link
NZ_AROY02000001	369	369	0	7	444,822	RefSeq:NZ_AROY02000001
NZ_AROY02000055	233	233	0	4	264,045	RefSeq:NZ_AROY02000055
NZ_AROY02000020	169	169	0	15	202,343	RefSeq:NZ_AROY02000020
NZ_AROY02000096	102	102	0	3	185,658	RefSeq:NZ_AROY02000096
NZ_AROY02000095	173	173	0	3	181,409	RefSeq:NZ_AROY02000095
NZ_AROY02000044	140	140	0	3	157,210	RefSeq:NZ_AROY02000044
NZ_AROY02000019	134	134	0	1	150,101	RefSeq:NZ_AROY02000019
NZ_AROY02000036	144	144	0	7	145,187	RefSeq:NZ_AROY02000036
NZ_AROY02000105	131	131	0	1	142,296	RefSeq:NZ_AROY02000105
NZ_AROY02000013	120	120	0	2	137,831	RefSeq:NZ_AROY02000013
NZ_AROY02000047	140	140	0	0	135,363	RefSeq:NZ_AROY02000047
NZ_AROY02000089	89	89	0	6	122,285	RefSeq:NZ_AROY02000089
NZ_AROY02000068	103	103	0	5	116,847	RefSeq:NZ_AROY02000068
NZ_AROY02000009	91	91	0	1	115,916	RefSeq:NZ_AROY02000009
NZ_AROY02000097	102	102	0	3	115,405	RefSeq:NZ_AROY02000097
NZ_AROY02000038	76	76	0	6	114,718	RefSeq:NZ_AROY02000038
NZ_AROY02000037	104	104	0	4	110,263	RefSeq:NZ_AROY02000037
NZ_AROY02000026	85	85	0	3	107,713	RefSeq:NZ_AROY02000026
NZ_AROY02000031	92	92	0	2	103,751	RefSeq:NZ_AROY02000031
NZ_AROY02000010	78	78	0	3	100,575	RefSeq:NZ_AROY02000010
NZ_AROY02000018	83	83	0	3	95,198	RefSeq:NZ_AROY02000018
NZ_AROY02000002	79	79	0	3	93,262	RefSeq:NZ_AROY02000002
NZ_AROY02000032	91	91	0	0	91,455	RefSeq:NZ_AROY02000032
NZ_AROY02000061	81	81	0	3	87,361	RefSeq:NZ_AROY02000061
NZ_AROY02000004	66	66	0	4	86,845	RefSeq:NZ_AROY02000004
NZ_AROY02000110	79	79	0	2	86,727	RefSeq:NZ_AROY02000110
NZ_AROY02000006	82	82	0	2	86,323	RefSeq:NZ_AROY02000006
NZ_AROY02000063	64	64	0	1	85,300	RefSeq:NZ_AROY02000063
NZ_AROY02000074	63	63	0	5	85,097	RefSeq:NZ_AROY02000074
NZ_AROY02000098	62	62	0	2	84,189	RefSeq:NZ_AROY02000098
NZ_AROY02000045	67	67	0	0	83,827	RefSeq:NZ_AROY02000045
NZ_AROY02000083	79	79	0	2	81,341	RefSeq:NZ_AROY02000083
NZ_AROY02000048	78	78	0	4	80,719	RefSeq:NZ_AROY02000048
NZ_AROY02000233	61	61	0	6	79,231	RefSeq:NZ_AROY02000233
NZ_AROY02000081	70	70	0	0	78,776	RefSeq:NZ_AROY02000081
NZ_AROY02000082	72	72	0	3	78,361	RefSeq:NZ_AROY02000082
NZ_AROY02000161	55	55	0	1	75,987	RefSeq:NZ_AROY02000161
NZ_AROY02000169	70	70	0	0	75,627	RefSeq:NZ_AROY02000169
NZ_AROY02000072	66	66	0	2	73,516	RefSeq:NZ_AROY02000072
NZ_AROY02000087	58	58	0	1	70,837	RefSeq:NZ_AROY02000087
NZ_AROY02000021	47	47	0	4	69,847	RefSeq:NZ_AROY02000021
NZ_AROY02000005	61	61	0	0	69,605	RefSeq:NZ_AROY02000005
NZ_AROY02000046	61	61	0	2	67,030	RefSeq:NZ_AROY02000046
NZ_AROY02000088	57	57	0	0	65,689	RefSeq:NZ_AROY02000088
NZ_AROY02000073	59	59	0	2	64,008	RefSeq:NZ_AROY02000073
NZ_AROY02000077	57	57	0	2	63,317	RefSeq:NZ_AROY02000077
NZ_AROY02000049	57	57	0	3	62,674	RefSeq:NZ_AROY02000049
NZ_AROY02000056	54	54	0	0	61,581	RefSeq:NZ_AROY02000056
NZ_AROY02000080	55	55	0	2	60,086	RefSeq:NZ_AROY02000080
NZ_AROY02000114	41	41	0	1	59,992	RefSeq:NZ_AROY02000114
NZ_AROY02000078	52	52	0	1	59,859	RefSeq:NZ_AROY02000078
NZ_AROY02000075	55	55	0	2	59,117	RefSeq:NZ_AROY02000075
NZ_AROY02000141	54	54	0	0	56,328	RefSeq:NZ_AROY02000141
NZ_AROY02000040	53	53	0	0	56,119	RefSeq:NZ_AROY02000040
NZ_AROY02000104	43	43	0	3	55,903	RefSeq:NZ_AROY02000104
NZ_AROY02000051	48	48	0	2	55,795	RefSeq:NZ_AROY02000051
NZ_AROY02000108	56	56	0	2	54,894	RefSeq:NZ_AROY02000108
NZ_AROY02000067	49	49	0	0	53,328	RefSeq:NZ_AROY02000067
NZ_AROY02000173	52	52	0	0	53,045	RefSeq:NZ_AROY02000173
NZ_AROY02000240	47	47	0	0	52,408	RefSeq:NZ_AROY02000240
NZ_AROY02000145	44	44	0	0	50,189	RefSeq:NZ_AROY02000145
NZ_AROY02000127	44	44	0	6	50,170	RefSeq:NZ_AROY02000127
NZ_AROY02000140	29	29	0	1	49,278	RefSeq:NZ_AROY02000140
NZ_AROY02000012	39	39	0	2	48,763	RefSeq:NZ_AROY02000012
NZ_AROY02000117	51	51	0	4	48,753	RefSeq:NZ_AROY02000117
NZ_AROY02000042	42	42	0	1	48,480	RefSeq:NZ_AROY02000042
NZ_AROY02000014	44	44	0	0	48,145	RefSeq:NZ_AROY02000014
NZ_AROY02000057	43	43	0	1	47,168	RefSeq:NZ_AROY02000057
NZ_AROY02000015	39	39	0	0	46,588	RefSeq:NZ_AROY02000015
NZ_AROY02000011	39	39	0	1	46,509	RefSeq:NZ_AROY02000011
NZ_AROY02000079	46	46	0	4	45,901	RefSeq:NZ_AROY02000079
NZ_AROY02000028	43	43	0	1	44,663	RefSeq:NZ_AROY02000028
NZ_AROY02000099	40	40	0	0	44,001	RefSeq:NZ_AROY02000099
NZ_AROY02000107	35	35	0	1	43,621	RefSeq:NZ_AROY02000107
NZ_AROY02000035	35	35	0	2	41,953	RefSeq:NZ_AROY02000035
NZ_AROY02000092	34	34	0	1	41,709	RefSeq:NZ_AROY02000092
NZ_AROY02000116	31	31	0	0	41,683	RefSeq:NZ_AROY02000116
NZ_AROY02000148	34	34	0	2	40,831	RefSeq:NZ_AROY02000148
NZ_AROY02000197	34	34	0	0	40,723	RefSeq:NZ_AROY02000197
NZ_AROY02000152	33	33	0	0	40,703	RefSeq:NZ_AROY02000152
NZ_AROY02000052	34	34	0	1	40,421	RefSeq:NZ_AROY02000052
NZ_AROY02000163	24	24	0	1	39,953	RefSeq:NZ_AROY02000163
NZ_AROY02000008	36	36	0	2	39,220	RefSeq:NZ_AROY02000008
NZ_AROY02000025	36	36	0	1	38,825	RefSeq:NZ_AROY02000025
NZ_AROY02000106	34	34	0	5	38,039	RefSeq:NZ_AROY02000106
NZ_AROY02000003	28	28	0	1	37,673	RefSeq:NZ_AROY02000003
NZ_AROY02000119	23	23	0	0	37,304	RefSeq:NZ_AROY02000119
NZ_AROY02000126	38	38	0	1	36,966	RefSeq:NZ_AROY02000126
NZ_AROY02000041	29	29	0	2	36,824	RefSeq:NZ_AROY02000041
NZ_AROY02000043	34	34	0	1	35,533	RefSeq:NZ_AROY02000043
NZ_AROY02000137	23	23	0	1	34,528	RefSeq:NZ_AROY02000137
NZ_AROY02000192	31	31	0	3	34,022	RefSeq:NZ_AROY02000192
NZ_AROY02000143	25	25	0	0	33,780	RefSeq:NZ_AROY02000143
NZ_AROY02000186	30	30	0	0	33,197	RefSeq:NZ_AROY02000186
NZ_AROY02000115	32	32	0	0	32,984	RefSeq:NZ_AROY02000115
NZ_AROY02000159	29	29	0	2	31,955	RefSeq:NZ_AROY02000159
NZ_AROY02000007	27	27	0	0	31,932	RefSeq:NZ_AROY02000007
NZ_AROY02000130	28	28	0	1	31,859	RefSeq:NZ_AROY02000130
NZ_AROY02000124	28	28	0	0	31,176	RefSeq:NZ_AROY02000124
NZ_AROY02000102	19	19	0	0	30,791	RefSeq:NZ_AROY02000102
NZ_AROY02000071	28	28	0	2	30,544	RefSeq:NZ_AROY02000071
NZ_AROY02000022	24	24	0	1	29,280	RefSeq:NZ_AROY02000022
NZ_AROY02000016	25	25	0	0	28,753	RefSeq:NZ_AROY02000016
NZ_AROY02000129	27	27	0	1	28,501	RefSeq:NZ_AROY02000129
NZ_AROY02000168	25	25	0	1	28,124	RefSeq:NZ_AROY02000168
NZ_AROY02000070	22	22	0	1	27,989	RefSeq:NZ_AROY02000070
NZ_AROY02000195	24	24	0	1	27,941	RefSeq:NZ_AROY02000195
NZ_AROY02000034	25	25	0	1	27,738	RefSeq:NZ_AROY02000034
NZ_AROY02000147	24	24	0	0	27,562	RefSeq:NZ_AROY02000147
NZ_AROY02000050	36	36	0	0	27,544	RefSeq:NZ_AROY02000050
NZ_AROY02000023	23	23	0	0	27,209	RefSeq:NZ_AROY02000023
NZ_AROY02000109	18	18	0	0	26,858	RefSeq:NZ_AROY02000109
NZ_AROY02000086	22	22	0	4	26,496	RefSeq:NZ_AROY02000086
NZ_AROY02000155	21	21	0	2	26,208	RefSeq:NZ_AROY02000155
NZ_AROY02000118	20	20	0	1	25,309	RefSeq:NZ_AROY02000118
NZ_AROY02000122	21	21	0	1	24,337	RefSeq:NZ_AROY02000122
NZ_AROY02000030	18	18	0	1	24,259	RefSeq:NZ_AROY02000030
NZ_AROY02000121	22	22	0	3	23,991	RefSeq:NZ_AROY02000121
NZ_AROY02000234	18	18	0	0	23,703	RefSeq:NZ_AROY02000234
NZ_AROY02000094	16	16	0	1	23,688	RefSeq:NZ_AROY02000094
NZ_AROY02000060	19	19	0	2	23,429	RefSeq:NZ_AROY02000060
NZ_AROY02000182	14	14	0	0	23,256	RefSeq:NZ_AROY02000182
NZ_AROY02000139	13	13	0	1	23,072	RefSeq:NZ_AROY02000139
NZ_AROY02000027	20	20	0	1	23,030	RefSeq:NZ_AROY02000027
NZ_AROY02000171	22	22	0	0	22,178	RefSeq:NZ_AROY02000171
NZ_AROY02000134	24	24	0	0	21,946	RefSeq:NZ_AROY02000134
NZ_AROY02000136	14	14	0	0	21,481	RefSeq:NZ_AROY02000136
NZ_AROY02000039	15	15	0	0	21,339	RefSeq:NZ_AROY02000039
NZ_AROY02000123	23	23	0	2	21,273	RefSeq:NZ_AROY02000123
NZ_AROY02000236	13	13	0	1	21,250	RefSeq:NZ_AROY02000236
NZ_AROY02000158	16	16	0	0	20,476	RefSeq:NZ_AROY02000158
NZ_AROY02000053	21	21	0	0	20,428	RefSeq:NZ_AROY02000053
NZ_AROY02000054	18	18	0	0	20,341	RefSeq:NZ_AROY02000054
NZ_AROY02000103	13	13	0	1	20,159	RefSeq:NZ_AROY02000103
NZ_AROY02000138	18	18	0	1	19,888	RefSeq:NZ_AROY02000138
NZ_AROY02000029	18	18	0	0	18,457	RefSeq:NZ_AROY02000029
NZ_AROY02000164	18	18	0	1	18,283	RefSeq:NZ_AROY02000164
NZ_AROY02000150	18	18	0	0	18,087	RefSeq:NZ_AROY02000150
NZ_AROY02000131	11	11	0	0	17,657	RefSeq:NZ_AROY02000131
NZ_AROY02000076	15	15	0	0	16,192	RefSeq:NZ_AROY02000076
NZ_AROY02000189	13	13	0	0	15,636	RefSeq:NZ_AROY02000189
NZ_AROY02000203	13	13	0	0	15,322	RefSeq:NZ_AROY02000203
NZ_AROY02000162	14	14	0	0	14,836	RefSeq:NZ_AROY02000162
NZ_AROY02000149	14	14	0	2	13,946	RefSeq:NZ_AROY02000149
NZ_AROY02000166	10	10	0	2	13,696	RefSeq:NZ_AROY02000166
NZ_AROY02000024	12	12	0	0	13,189	RefSeq:NZ_AROY02000024
NZ_AROY02000204	12	12	0	0	12,931	RefSeq:NZ_AROY02000204
NZ_AROY02000144	13	13	0	1	12,786	RefSeq:NZ_AROY02000144
NZ_AROY02000156	13	13	0	1	12,332	RefSeq:NZ_AROY02000156
NZ_AROY02000179	11	11	0	1	11,412	RefSeq:NZ_AROY02000179
NZ_AROY02000091	10	10	0	1	11,338	RefSeq:NZ_AROY02000091
91 Undisplayed Contigs/Replicons	311	311	0	44	577,536

Total:	8,055	7,774	0	281	9,304,371

Ortholog data available?	Yes

Database Contents

Genes	7,774
Pathways	290
Enzymatic Reactions	1,493
Transport Reactions	65
Polypeptides	7,868
Protein Complexes	9
Enzymes	1,140
Transporters	678
Compounds	1,107
tRNAs	68
Protein Features	8,906
GO Annotations	4,763

Database Version

29.6

Taxonomic Lineage	cellular organisms Bacteria <bacteria> Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces albulus Streptomyces albulus CCRC 11814
Genetic Code Number	11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLE	SAMN02471960
NCBI BioProject	PRJNA224116
NCBI-Taxonomy	1316445
Annotation Provider	NCBI RefSeq
Annotation Date	2021-03-10
Annotation Pipeline	NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Pipeline Version	5.1
Annotation Comment	Best-placed reference protein set; GeneMarkS-2+

References

Caspi20: Caspi R, Billington R, Keseler IM, Kothari A, Krummenacker M, Midford PE, Ong WK, Paley S, Subhraveti P, Karp PD (2020). "The MetaCyc database of metabolic pathways and enzymes - a 2019 update." Nucleic Acids Res 48(D1);D445-D453. PMID: 31586394

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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Page generated by Pathway Tools version 29.5 (software by SRI International) on Thu Jun 11, 2026, BIOCYC14A.

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