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MetaCyc Publications
If you use MetaCyc in your research, we ask that you cite the following publication:
[MetaCyc14]
Caspi, R. Altman, T. Billington. R, Dreher. K, Foerster. H, Fulcher. CA, Holland. TA, Keseler. IM, Kothari. A,
Kubo. A, Krummenacker. M, Latendresse. M, Mueller. LA, Ong. Q, Paley. S, Subhraveti. P, Weaver. DS, Weerasinghe. D,
Zhang P, and Karp, P.D.(2014)
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc
collection of Pathway/Genome Databases
Nucleic Acids Research 42(1):D459-D471.
Additional Publications
[MetaCyc13]
T, Altman., M, Travers., A, Kothari., R. Caspi., and P.D. Karp.
A systematic comparison of the MetaCyc and KEGG pathway
databases.
BMC Bioinformatics. doi: 10.1186/1471-2105-14-112. 2013.
[MetaCyc13]
Caspi, R., Dreher, K., and Karp, P.D
The challenge of constructing, classifying, and representing metabolic pathways.
[MetaCyc12]
Caspi, R., Altman, T., Dreher, K., Fulcher, CA., Subhraveti, P., Keseler, IM., Kothari, A., Krummenacker, M., Latendresse, M.,
Mueller, LA., Ong, Q., Paley, S., Pujar, A., Shearer, AG., Travers, M., Weerasinghe, D., Zhang, P., and Karp, P.D. (2012)
[MetaCyc11]
Karp, PD., and Caspi, R.,
A survey of metabolic databases emphasizing the MetaCyc family
[MetaCyc10]
Caspi, R., Altman, T., Dale, J.M., Dreher, K., Fulcher, C.A., Gilham, F., Kaipa, P., Karthikeyan, A.S., Kothari, A., Krummenacker, M., Latendresse, M., Mueller, L.A., Paley, S., Popescu, L., Pujar, A., Shearer, A., Zhang, P. and Karp, P.D. (2010)
[MetaCyc08]
Caspi, R., Foerster, H., Fulcher, C.A., Kaipa, P., Krummenacker, M.,
Latendresse, M., Paley, S., Rhee, S.Y., Shearer, A., Tissier, C.,
Walk, T.C., Zhang, P. and Karp, P.D. (2008)
[MetaCyc06]
Caspi, R., Foerster, H., Fulcher, C.A., Hopkinson, R.,
Ingraham, J., Kaipa, P., Krummenacker, M., Paley, S., Pick, J.,
Rhee, S.Y., Tissier, C., Zhang, P. and Karp, P.D. (2006) [MetaCyc04]
Krieger, C.J., Zhang, P., Mueller, L.A., Wang, A., Paley, S.,
Arnaud, M., Pick, J., Rhee, S.Y., and Karp, P.D. (2004) [MetaCyc03]
Karp, P.D. (2003) [MetaCyc02]
Karp, P.D., Riley, M., Paley, S. and Pellegrini-Toole, A. (2002) [MetaCyc00]
Karp, P.D., Riley, M., Saier, M., Paulsen, I.T., Paley, S., and Pellegrini-Toole, A. (2000)
FEMS Microbiol Lett. doi: 10.1111/1574-6968.12194. 2013.
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc
collection of Pathway/Genome Databases
Nucleic Acids Research 40(1):D742-D753. 2012
Archives of Toxicology 85:1015-33 2011.
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc
collection of Pathway/Genome Databases
Nucleic Acids Research 38(1):D473-D479.
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc
collection of Pathway/Genome Databases
Nucleic Acids Research 36(1):D623-D631.
MetaCyc:
A multiorganism database of metabolic pathways and enzymes
Nucleic Acids Research, 34:D511-D516.
MetaCyc: A Multiorganism Database of Metabolic Pathways and Enzymes,
Nucleic Acids Research 32(1):D438-42.
The MetaCyc Metabolic Pathway Database
in: Metabolic Engineering, B. Kholodenko and H. Westerhoff eds.,
Horizon Scientific Press.
The MetaCyc Database
Nucleic Acids Research, 30(1):59-61.
The EcoCyc and MetaCyc Databases
Nucleic Acids Research, 28(1):56-59.
See also the BioCyc Publications Page